Detailed information of SNP:
|
SNP ID:
sf0303147152(Gbrowse)
Chromosome: chr03 Position: 3147152 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 55.60% | 44.40% |
| All Indica | 792 | 87.88% | 12.12% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 89.76% | 10.24% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303147152 | T->C | INTERGENIC | None |