Detailed information of SNP:
|
SNP ID:
sf0303195779(Gbrowse)
Chromosome: chr03 Position: 3195779 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.92% | 49.08% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303195779 | C->T | INTERGENIC | None |