Detailed information of SNP:
|
SNP ID:
sf0303207449(Gbrowse)
Chromosome: chr03 Position: 3207449 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 58.16% | 41.84% |
| All Indica | 797 | 91.34% | 8.66% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 373 | 86.33% | 13.67% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303207449 | C->A | INTERGENIC | None |