Detailed information of SNP:
|
SNP ID:
sf0303209292(Gbrowse)
Chromosome: chr03 Position: 3209292 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303209292 | C->T | LOC_Os03g06420(LOC_Os03g06420.1) | UTR_3_PRIME |
| sf0303209292 | C->T | LOC_Os03g06420(LOC_Os03g06420.3) | UTR_3_PRIME |
| sf0303209292 | C->T | LOC_Os03g06420(LOC_Os03g06420.4) | UTR_3_PRIME |
| sf0303209292 | C->T | LOC_Os03g06420(LOC_Os03g06420.2) | UTR_3_PRIME |