Detailed information of SNP:
|
SNP ID:
sf0303227690(Gbrowse)
Chromosome: chr03 Position: 3227690 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 94.55% | 5.45% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303227690 | T->C | INTERGENIC | None |