Detailed information of SNP:
|
SNP ID:
sf0303247759(Gbrowse)
Chromosome: chr03 Position: 3247759 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 58.52% | 41.48% |
| All Indica | 797 | 37.39% | 62.61% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 373 | 45.58% | 54.42% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303247759 | G->A | INTERGENIC | None |