Detailed information of SNP:
|
SNP ID:
sf0303251102(Gbrowse)
Chromosome: chr03 Position: 3251102 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.61% | 44.39% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303251102 | A->G | INTERGENIC | None |