Detailed information of SNP:
|
SNP ID:
sf0303294473(Gbrowse)
Chromosome: chr03 Position: 3294473 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 53.72% | 46.28% |
| All Indica | 782 | 65.09% | 34.91% |
| All Japonica | 469 | 27.51% | 72.49% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 369 | 87.26% | 12.74% |
| Indica II | 202 | 35.15% | 64.85% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 319 | 11.91% | 88.09% |
| Tropical Japonica | 86 | 76.74% | 23.26% |
| Japonica Intermediate | 64 | 39.06% | 60.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303294473 | T->C | INTERGENIC | None |