Detailed information of SNP:
|
SNP ID:
sf0303328791(Gbrowse)
Chromosome: chr03 Position: 3328791 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.78% | 49.22% |
| All Indica | 799 | 21.90% | 78.10% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 2.93% | 97.07% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 14.22% | 85.78% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303328791 | C->T | INTERGENIC | None |