Detailed information of SNP:
|
SNP ID:
sf0303333753(Gbrowse)
Chromosome: chr03 Position: 3333753 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 63.49% | 36.51% |
| All Indica | 789 | 44.87% | 55.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 43.47% | 56.53% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 201 | 26.87% | 73.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303333753 | C->T | INTERGENIC | None |