Detailed information of SNP:
|
SNP ID:
sf0303345065(Gbrowse)
Chromosome: chr03 Position: 3345065 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.01% | 31.99% |
| All Indica | 799 | 46.93% | 53.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 44.00% | 56.00% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303345065 | G->T | INTERGENIC | None |