Detailed information of SNP:
|
SNP ID:
sf0303349058(Gbrowse)
Chromosome: chr03 Position: 3349058 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 97.56% | 2.44% |
| All Indica | 736 | 96.20% | 3.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 333 | 95.20% | 4.80% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 193 | 95.85% | 4.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303349058 | G->A | LOC_Os03g06640(LOC_Os03g06640.1) | INTRON |