Detailed information of SNP:
|
SNP ID:
sf0303411430(Gbrowse)
Chromosome: chr03 Position: 3411430 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 69.61% | 30.39% |
| All Indica | 773 | 96.77% | 3.23% |
| All Japonica | 496 | 30.24% | 69.76% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 366 | 98.36% | 1.64% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 197 | 94.42% | 5.58% |
| Temperate Japonica | 334 | 29.34% | 70.66% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303411430 | A->G | LOC_Os03g06710(LOC_Os03g06710.1) | INTRON |