Detailed information of SNP:
|
SNP ID:
sf0303447499(Gbrowse)
Chromosome: chr03 Position: 3447499 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.46% | 46.54% |
| All Indica | 798 | 38.47% | 61.53% |
| All Japonica | 496 | 73.99% | 26.01% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 22.93% | 77.07% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 334 | 73.05% | 26.95% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303447499 | A->G | INTERGENIC | None |