Detailed information of SNP:
|
SNP ID:
sf0303632064(Gbrowse)
Chromosome: chr03 Position: 3632064 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.58% | 11.42% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 63.88% | 36.12% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303632064 | G->T | LOC_Os03g07110(LOC_Os03g07110.2) | Synonymous |
| sf0303632064 | G->T | LOC_Os03g07110(LOC_Os03g07110.1) | Synonymous |
| sf0303632064 | G->T | LOC_Os03g07110(LOC_Os03g07110.3) | Synonymous |