Detailed information of SNP:
|
SNP ID:
sf0303677912(Gbrowse)
Chromosome: chr03 Position: 3677912 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1234 | 58.27% | 41.73% |
| All Indica | 637 | 24.02% | 75.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 50 | 74.00% | 26.00% |
| Indica I | 291 | 17.53% | 82.47% |
| Indica II | 188 | 29.26% | 70.74% |
| Indica Intermediate | 158 | 29.75% | 70.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 58.33% | 41.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303677912 | T->C | LOC_Os03g07170(LOC_Os03g07170.1) | UTR_3_PRIME |
| sf0303677912 | T->C | LOC_Os03g07180(LOC_Os03g07180.1) | Non-Synonymous SNP |
| sf0303677912 | T->C | LOC_Os03g07180(LOC_Os03g07180.2) | Non-Synonymous SNP |
| sf0303677912 | T->C | LOC_Os03g07180(LOC_Os03g07180.3) | Non-Synonymous SNP |