Detailed information of SNP:
|
SNP ID:
sf0303682313(Gbrowse)
Chromosome: chr03 Position: 3682313 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.55% | 40.45% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303682313 | A->G | LOC_Os03g07200(LOC_Os03g07200.1) | UTR_3_PRIME |
| sf0303682313 | A->G | LOC_Os03g07200(LOC_Os03g07200.2) | UTR_3_PRIME |
| sf0303682313 | A->G | LOC_Os03g07200(LOC_Os03g07200.3) | UTR_3_PRIME |
| sf0303682313 | A->G | LOC_Os03g07190(LOC_Os03g07190.1) | UTR_3_PRIME |