Detailed information of SNP:
|
SNP ID:
sf0303810209(Gbrowse)
Chromosome: chr03 Position: 3810209 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.84% | 41.16% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303810209 | C->T | INTERGENIC | None |