Detailed information of SNP:
|
SNP ID:
sf0303831561(Gbrowse)
Chromosome: chr03 Position: 3831561 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.27% | 9.73% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 74.25% | 25.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303831561 | G->T | INTERGENIC | None |