Detailed information of SNP:
|
SNP ID:
sf0303856833(Gbrowse)
Chromosome: chr03 Position: 3856833 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 98.10% | 1.90% |
| All Indica | 749 | 96.53% | 3.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 94.44% | 5.56% |
| Indica II | 185 | 99.46% | 0.54% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303856833 | G->A | LOC_Os03g07570(LOC_Os03g07570.3) | Non-Synonymous SNP |
| sf0303856833 | G->A | LOC_Os03g07570(LOC_Os03g07570.1) | Non-Synonymous SNP |
| sf0303856833 | G->A | LOC_Os03g07570(LOC_Os03g07570.4) | Non-Synonymous SNP |