Detailed information of SNP:



SNP ID: sf0303856833(Gbrowse)

Chromosome: chr03

Position: 3856833
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1366 98.10% 1.90%
All Indica749 96.53% 3.47%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I360 94.44% 5.56%
Indica II185 99.46% 0.54%
Indica Intermediate204 97.55% 2.45%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0303856833 G->A LOC_Os03g07570(LOC_Os03g07570.3) Non-Synonymous SNP
sf0303856833 G->A LOC_Os03g07570(LOC_Os03g07570.1) Non-Synonymous SNP
sf0303856833 G->A LOC_Os03g07570(LOC_Os03g07570.4) Non-Synonymous SNP