Detailed information of SNP:
|
SNP ID:
sf0303914808(Gbrowse)
Chromosome: chr03 Position: 3914808 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.09% | 3.91% |
| All Indica | 788 | 95.18% | 4.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303914808 | C->T | INTERGENIC | None |