Detailed information of SNP:
|
SNP ID:
sf0303954120(Gbrowse)
Chromosome: chr03 Position: 3954120 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 69.58% | 30.42% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303954120 | G->A | INTERGENIC | None |