Detailed information of SNP:



SNP ID: sf0303954120(Gbrowse)

Chromosome: chr03

Position: 3954120
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1417 69.58% 30.42%
All Indica799 94.74% 5.26%
All Japonica496 27.22% 72.78%
Aus67 94.03% 5.97%
Indica I375 95.47% 4.53%
Indica II213 96.24% 3.76%
Indica Intermediate211 91.94% 8.06%
Temperate Japonica335 10.75% 89.25%
Tropical Japonica93 88.17% 11.83%
Japonica Intermediate68 25.00% 75.00%
Group VI/Aromatic14 7.14% 92.86%
Intermediate41 73.17% 26.83%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0303954120 G->A INTERGENIC None