Detailed information of SNP:
|
SNP ID:
sf0303982087(Gbrowse)
Chromosome: chr03 Position: 3982087 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 97.39% | 2.61% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 459 | 92.37% | 7.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 303 | 97.03% | 2.97% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 62 | 64.52% | 35.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0303982087 | A->T | LOC_Os03g07820(LOC_Os03g07820.1) | INTRON |