Detailed information of SNP:
|
SNP ID:
sf0304000170(Gbrowse)
Chromosome: chr03 Position: 4000170 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 63.95% | 36.05% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 467 | 5.78% | 94.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 319 | 2.82% | 97.18% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 56 | 26.79% | 73.21% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304000170 | G->A | INTERGENIC | None |