Detailed information of SNP:
|
SNP ID:
sf0304040961(Gbrowse)
Chromosome: chr03 Position: 4040961 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 87.45% | 12.55% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 488 | 66.60% | 33.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 87.69% | 12.31% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 61 | 42.62% | 57.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304040961 | T->G | INTERGENIC | None |