Detailed information of SNP:
|
SNP ID:
sf0304098616(Gbrowse)
Chromosome: chr03 Position: 4098616 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 71.28% | 28.72% |
| All Indica | 753 | 49.14% | 50.86% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 357 | 38.94% | 61.06% |
| Indica II | 194 | 50.00% | 50.00% |
| Indica Intermediate | 202 | 66.34% | 33.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304098616 | C->T | INTERGENIC | None |