Detailed information of SNP:
|
SNP ID:
sf0304129871(Gbrowse)
Chromosome: chr03 Position: 4129871 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 98.80% | 1.20% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304129871 | T->C | LOC_Os03g08080(LOC_Os03g08080.1) | UTR_3_PRIME |
| sf0304129871 | T->C | LOC_Os03g08090(LOC_Os03g08090.1) | UTR_3_PRIME |