Detailed information of SNP:
|
SNP ID:
sf0304181143(Gbrowse)
Chromosome: chr03 Position: 4181143 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.50% | 26.50% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 38.03% | 61.97% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304181143 | A->C | LOC_Os03g08200(LOC_Os03g08200.2) | Synonymous |
| sf0304181143 | A->C | LOC_Os03g08200(LOC_Os03g08200.1) | Synonymous |