Detailed information of SNP:
|
SNP ID:
sf0304268559(Gbrowse)
Chromosome: chr03 Position: 4268559 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1302 | 86.02% | 13.98% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 386 | 61.40% | 38.60% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 230 | 43.04% | 56.96% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 62 | 80.65% | 19.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304268559 | A->G | LOC_Os03g08360(LOC_Os03g08360.3) | INTRON |
| sf0304268559 | A->G | LOC_Os03g08360(LOC_Os03g08360.1) | INTRON |