Detailed information of SNP:
SNP ID:
sf0304268559(Gbrowse)
Chromosome: chr03 Position: 4268559 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1302 | 86.02% | 13.98% |
All Indica | 799 | 96.50% | 3.50% |
All Japonica | 386 | 61.40% | 38.60% |
Aus | 64 | 98.44% | 1.56% |
Indica I | 375 | 96.00% | 4.00% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 95.73% | 4.27% |
Temperate Japonica | 230 | 43.04% | 56.96% |
Tropical Japonica | 94 | 93.62% | 6.38% |
Japonica Intermediate | 62 | 80.65% | 19.35% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0304268559 | A->G | LOC_Os03g08360(LOC_Os03g08360.3) | INTRON |
sf0304268559 | A->G | LOC_Os03g08360(LOC_Os03g08360.1) | INTRON |