Detailed information of SNP:
|
SNP ID:
sf0304302831(Gbrowse)
Chromosome: chr03 Position: 4302831 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 70.62% | 29.38% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 478 | 24.06% | 75.94% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 318 | 8.81% | 91.19% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304302831 | G->A | INTERGENIC | None |