Detailed information of SNP:
|
SNP ID:
sf0304318581(Gbrowse)
Chromosome: chr03 Position: 4318581 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 69.09% | 30.91% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 495 | 21.82% | 78.18% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304318581 | G->A | INTERGENIC | None |