Detailed information of SNP:
|
SNP ID:
sf0304337027(Gbrowse)
Chromosome: chr03 Position: 4337027 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.05% | 21.95% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 43.86% | 56.14% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 26.87% | 73.13% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304337027 | A->G | LOC_Os03g08440(LOC_Os03g08440.1) | Synonymous |
| sf0304337027 | A->G | LOC_Os03g08440(LOC_Os03g08440.2) | Synonymous |