Detailed information of SNP:
|
SNP ID:
sf0304595106(Gbrowse)
Chromosome: chr03 Position: 4595106 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 798 | 29.82% | 70.18% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 4.00% | 96.00% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 21.43% | 78.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304595106 | C->T | LOC_Os03g08870(LOC_Os03g08870.1) | UTR_5_PRIME |