Detailed information of SNP:
|
SNP ID:
sf0304596760(Gbrowse)
Chromosome: chr03 Position: 4596760 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.17% | 38.83% |
| All Indica | 799 | 37.05% | 62.95% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 11.20% | 88.80% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304596760 | C->T | LOC_Os03g08870(LOC_Os03g08870.1) | INTRON |