Detailed information of SNP:
|
SNP ID:
sf0304622017(Gbrowse)
Chromosome: chr03 Position: 4622017 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.00% | 47.00% |
| All Indica | 799 | 88.24% | 11.76% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 30.00% | 70.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304622017 | C->T | INTERGENIC | None |