Detailed information of SNP:
|
SNP ID:
sf0304632827(Gbrowse)
Chromosome: chr03 Position: 4632827 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.11% | 49.89% |
| All Indica | 797 | 81.18% | 18.82% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304632827 | G->A | INTERGENIC | None |