Detailed information of SNP:
|
SNP ID:
sf0304641913(Gbrowse)
Chromosome: chr03 Position: 4641913 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 94.49% | 5.51% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 86.44% | 13.56% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304641913 | C->T | INTERGENIC | None |