Detailed information of SNP:
|
SNP ID:
sf0304653589(Gbrowse)
Chromosome: chr03 Position: 4653589 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.67% | 49.33% |
| All Indica | 799 | 19.02% | 80.98% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 8.80% | 91.20% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304653589 | G->A | LOC_Os03g08960(LOC_Os03g08960.1) | UTR_3_PRIME |