Detailed information of SNP:
|
SNP ID:
sf0304669642(Gbrowse)
Chromosome: chr03 Position: 4669642 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.92% | 49.08% |
| All Indica | 799 | 84.61% | 15.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304669642 | C->A | INTERGENIC | None |