Detailed information of SNP:
|
SNP ID:
sf0304676795(Gbrowse)
Chromosome: chr03 Position: 4676795 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.78% | 47.22% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304676795 | A->C | INTERGENIC | None |