Detailed information of SNP:
SNP ID:
sf0304678173(Gbrowse)
Chromosome: chr03 Position: 4678173 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 86.39% | 13.61% |
All Indica | 799 | 99.75% | 0.25% |
All Japonica | 497 | 63.38% | 36.62% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 74.93% | 25.07% |
Tropical Japonica | 94 | 12.77% | 87.23% |
Japonica Intermediate | 68 | 76.47% | 23.53% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0304678173 | C->A | INTERGENIC | None |