Detailed information of SNP:
|
SNP ID:
sf0304702747(Gbrowse)
Chromosome: chr03 Position: 4702747 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 98.36% | 1.64% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 484 | 95.45% | 4.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 97.55% | 2.45% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304702747 | G->A | LOC_Os03g09070(LOC_Os03g09070.1) | INTRON |