Detailed information of SNP:



SNP ID: sf0304702747(Gbrowse)

Chromosome: chr03

Position: 4702747
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1405 98.36% 1.64%
All Indica799 100.00% 0.00%
All Japonica484 95.45% 4.55%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica327 97.55% 2.45%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate63 77.78% 22.22%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0304702747 G->A LOC_Os03g09070(LOC_Os03g09070.1) INTRON