Detailed information of SNP:
|
SNP ID:
sf0304723458(Gbrowse)
Chromosome: chr03 Position: 4723458 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.58% | 47.42% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304723458 | C->T | INTERGENIC | None |