Detailed information of SNP:
|
SNP ID:
sf0304744818(Gbrowse)
Chromosome: chr03 Position: 4744818 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 96.43% | 3.57% |
| All Indica | 793 | 97.10% | 2.90% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 68.42% | 31.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304744818 | C->T | INTERGENIC | None |