Detailed information of SNP:
|
SNP ID:
sf0304751210(Gbrowse)
Chromosome: chr03 Position: 4751210 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.74% | 46.26% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304751210 | C->A | INTERGENIC | None |