Detailed information of SNP:
|
SNP ID:
sf0304751241(Gbrowse)
Chromosome: chr03 Position: 4751241 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 50.64% | 49.36% |
| All Indica | 796 | 18.97% | 81.03% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 5.33% | 94.67% |
| Indica II | 212 | 25.00% | 75.00% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304751241 | G->A | INTERGENIC | None |