Detailed information of SNP:
|
SNP ID:
sf0304751258(Gbrowse)
Chromosome: chr03 Position: 4751258 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.97% | 45.03% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304751258 | T->G | INTERGENIC | None |