Detailed information of SNP:
|
SNP ID:
sf0304756377(Gbrowse)
Chromosome: chr03 Position: 4756377 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 90.27% | 9.73% |
| All Indica | 799 | 88.99% | 11.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304756377 | C->G | INTERGENIC | None |