Detailed information of SNP:
|
SNP ID:
sf0304761697(Gbrowse)
Chromosome: chr03 Position: 4761697 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 92.78% | 7.22% |
| All Indica | 767 | 87.35% | 12.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 92.84% | 7.16% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 192 | 67.19% | 32.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304761697 | T->C | LOC_Os03g09130(LOC_Os03g09130.1) | INTRON |