Detailed information of SNP:



SNP ID: sf0304761697(Gbrowse)

Chromosome: chr03

Position: 4761697
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1386 92.78% 7.22%
All Indica767 87.35% 12.65%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I363 92.84% 7.16%
Indica II212 96.23% 3.77%
Indica Intermediate192 67.19% 32.81%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0304761697 T->C LOC_Os03g09130(LOC_Os03g09130.1) INTRON