Detailed information of SNP:
|
SNP ID:
sf0304790743(Gbrowse)
Chromosome: chr03 Position: 4790743 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 98.47% | 1.53% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 455 | 95.38% | 4.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 93.38% | 6.62% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304790743 | G->A | LOC_Os03g09190(LOC_Os03g09190.2) | Synonymous |
| sf0304790743 | G->A | LOC_Os03g09190(LOC_Os03g09190.1) | Synonymous |